Prediction Instructions: please enter the LocusId of the TR locus to predict. The system will generate detailed webpage and PDF report. The LocusId can be obtained from trexplorer-catalog and TRAD database. LocusId Format: Chromosome-StartPosition-EndPosition-RepeatMotif
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Download PDF ReportAbout TREFFIC
- • TREFFIC is a webserver that provides effect and pathogenicity prediction for user-submitted tandem repeats.
- • TREFFIC requires users to submit the locus ID of a tandem repeat. Locus IDs can be obtained from the trexplorer-catalog and our TRAD database.
- • TREFFIC leverages STRAS and RExPRT to predict the pathogenicity of tandem repeats.
- • The basic information and gene annotation for tandem repeats provided by TREFFIC are sourced from the trexplorer-catalog and our TRAD database.
- • The allele frequency data for tandem repeats provided by TREFFIC comes from Illumina 174k polymorphic TRs in 1kGP, Polymorphic TRs in 78 T2T assemblies, and TR-Atlas.
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